I have heard people say it is not worth trying to mate two unmatched case halves together. You have it even worse since you are mating across model years with the wrong trap door.
First headache is the cylinder spigots, the big holes where the cylinders mount. The factory machined those with two specific case halves mated together. The top surface is dead flat for the cylinder flange, and the hole is perfect, with no little "steps" where the two halves meet. I am told a rock-star machinist can pull the studs and machine the deck with a file-- I am doubtful of that. Otherwise you jig the assembled cases in a Bridgeport or other knee mill and deck the cylinder mating surfaces with a flycutter. If the steps across the halves are small enough to let the cylinders in, well, you lucked out. Otherwise you have to true up those big holes so the cylinders slide in.
OK, now the cylinders fit, but you have to make sure the flywheel bearing are co-linear. They can't be off centerline, even a few thousandths will screw things up. So there is a line hone you can buy from Eastern or most mechanics use a Sunnen hone with the right tool.
You have even more problems without a "mated" trap door. If you have cone dowels you have to find a cone dowel trap door. Either than or get the cones out, locate the right half in a mill, slap on the left half after removing the cones, and then move around the trap door until it matches the mainshaft and counter-shaft holes in the right case-- exactly. Then you hard-clamp the trap door and machine new dowel pin holes and install the dowels.
Even that is not enough-- you need to assemble the empty cases and trap door and line-bore the mainshaft bearing. You can use the Eastern 200-dollar tool, or a Sunnen hone. I showed using the tool
in this article. There is a table on the last page showing the tools, including the one to hone the crankcases. Sorry, I don't lend tools or work on other people's bikes, but there are plenty of good machinists out there. You need a machinist, or a very very good mechanic.
If your left case has trap door cone dowels, I would beg one of these fine gentleman for a cone-style trap door-- then do the line-hone and you might be OK.